Vol. XXX Issue 2
Article 4
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd"><!-- [et_pb_line_break_holder] --><html xmlns="http://www.w3.org/1999/xhtml"><!-- [et_pb_line_break_holder] --><head><!-- [et_pb_line_break_holder] --><meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1" /><!-- [et_pb_line_break_holder] --><title>Documento sin título</title><!-- [et_pb_line_break_holder] --></head><!-- [et_pb_line_break_holder] --><!-- [et_pb_line_break_holder] --><body><!-- [et_pb_line_break_holder] --><p align="right"><font size="3" face="Arial, Helvetica, sans-serif"><strong>ARTÍCULOS ORIGINALES</strong></font></p><!-- [et_pb_line_break_holder] --><p><font size="4" face="Arial, Helvetica, sans-serif"><strong>The Human Variome Project country node of Argentina in</strong> <!-- [et_pb_line_break_holder] --> <strong>the first two years of activity: past, present and future</strong></font></p><!-- [et_pb_line_break_holder] --><p><i><b><font size="3" face="Arial, Helvetica, sans-serif">El nodo Argentino del Proyecto Varioma Humano en los <!-- [et_pb_line_break_holder] --> primeros dos años de actividad: pasado, presente y futuro</font></b></i></p><!-- [et_pb_line_break_holder] --><p> </p><!-- [et_pb_line_break_holder] --><p><b><font size="3" face="Arial, Helvetica, sans-serif">Solano A.R.<SUP>1,2*</sup>, Garrido M.<SUP>3</sup>, Mele P.G.<SUP>1</sup>, Podestá E.J.<SUP>1</sup>, Reichardt J.K.V.<SUP>4</sup></font></b></p><!-- [et_pb_line_break_holder] --><p><font size="3" face="Arial, Helvetica, sans-serif"><font size="2"><SUP>1</sup> Instituto de Investigaciones <!-- [et_pb_line_break_holder] --> Biomedicas (INBIOMED), Facultad <!-- [et_pb_line_break_holder] --> de Medicina, Universidad de <!-- [et_pb_line_break_holder] --> Buenos Aires-CONICET, Ciudad <!-- [et_pb_line_break_holder] --> Autonoma de Buenos Aires, <!-- [et_pb_line_break_holder] --> Argentina.<br /><!-- [et_pb_line_break_holder] --> <SUP>2</sup> Genotipificacion y Cancer<!-- [et_pb_line_break_holder] --> Hereditario, Centro de Educacion <!-- [et_pb_line_break_holder] --> Medica e Investigaciones Clinicas <!-- [et_pb_line_break_holder] -->“Norberto Quirno” (CEMIC), Ciudad <!-- [et_pb_line_break_holder] --> Autonoma de Buenos Aires, <!-- [et_pb_line_break_holder] --> Argentina.<br /><!-- [et_pb_line_break_holder] --> <SUP>3</sup> President of Innocence Project <!-- [et_pb_line_break_holder] --> Argentina, Florida, Vicente Lopez, <!-- [et_pb_line_break_holder] --> Buenos Aires, Argentina.<br /><!-- [et_pb_line_break_holder] --> <SUP>4</sup> Australian Institute of Tropical <!-- [et_pb_line_break_holder] --> Health and Medicine, James Cook <!-- [et_pb_line_break_holder] --> University, Cairns, Queensland, <!-- [et_pb_line_break_holder] --> Australia.<br /><!-- [et_pb_line_break_holder] --></font><font size="2"> <b>Corresponding author</b>: <!-- [et_pb_line_break_holder] -->Ángela Rosaria Solano <a href="mailto:asolano@cemic.edu.ar">asolano@cemic.edu.ar</a></font></font></p><!-- [et_pb_line_break_holder] --><p><font size="2" face="Arial, Helvetica, sans-serif">DOI: 10.35407/bag.2019.xxx.02.04</font></p><!-- [et_pb_line_break_holder] --><p><font size="2" face="Arial, Helvetica, sans-serif"><b>Received</b>: 11/05/2019<br /><!-- [et_pb_line_break_holder] --> <b>Accepted</b>: 12/06/2019</font></p><!-- [et_pb_line_break_holder] --><hr /><!-- [et_pb_line_break_holder] --><p><font size="2" face="Arial, Helvetica, sans-serif"><strong>ABSTRACT</strong></font></p><!-- [et_pb_line_break_holder] --><p><font size="2" face="Arial, Helvetica, sans-serif"><!-- [et_pb_line_break_holder] --> The Human Variome Project (HVP) is an international effort aiming systematically to collect<!-- [et_pb_line_break_holder] --> and share information on all human genetic variants. It has been working for years in<!-- [et_pb_line_break_holder] --> collaboration with local scientific societies by establishing systems to collect every genetic<!-- [et_pb_line_break_holder] --> variant reported in a country and to store these variants within a database repository: LOVD<!-- [et_pb_line_break_holder] --> (Argentinian chapter: ar.lovd.org). Formally established in 2017 in the Argentinian Node,<!-- [et_pb_line_break_holder] --> up to June 2019 we collected more than 25,000 genetic variants deposited by 17 different<!-- [et_pb_line_break_holder] --> laboratories. Nowadays the HVP country nodes represent more than 30 countries. In Latin<!-- [et_pb_line_break_holder] --> America there are four country nodes: Argentina, Brazil, Mexico and Venezuela; the first<!-- [et_pb_line_break_holder] --> two interacted recently launching the LatinGen database. In the present work we want to<!-- [et_pb_line_break_holder] --> share our experience in applying the HVP project focusing on its organization, rules and<!-- [et_pb_line_break_holder] --> nomenclature to reach the goal of sharing genetic variants and depositing them in the<!-- [et_pb_line_break_holder] --> Leiden Open Variation Database. Contributing laboratories are seeking to share variant data<!-- [et_pb_line_break_holder] --> to gain access all over the country. It is one of our goals to stimulate the highest quality by<!-- [et_pb_line_break_holder] --> organizing courses, applying current nomenclature rules, sponsoring lectures in national<!-- [et_pb_line_break_holder] --> congresses, distributing newsletter to serve the Argentinian genomics community and to<!-- [et_pb_line_break_holder] --> stimulate the interaction among Latin America countries.</font></p><!-- [et_pb_line_break_holder] --><p><font size="2" face="Arial, Helvetica, sans-serif"><b>Key words</b>: Data sharing; Argentinian chapter of LOVD; Human Variome Project (HVP)-Argentina</font><font size="2">.</font></p><!-- [et_pb_line_break_holder] --><p><font size="2" face="Arial, Helvetica, sans-serif"><strong>RESUMEN</strong></font></p><!-- [et_pb_line_break_holder] --><p><font size="2" face="Arial, Helvetica, sans-serif">El Proyecto Varioma Humano (HVP) es un esfuerzo internacional que tiene como objetivo<!-- [et_pb_line_break_holder] --> recopilar y compartir sistemáticamente información sobre todas las variantes genéticas<!-- [et_pb_line_break_holder] --> humanas. Hemos estado trabajando durante tres años en colaboración con sociedades<!-- [et_pb_line_break_holder] --> científicas locales, mediante el establecimiento de sistemas para recolectar todas las<!-- [et_pb_line_break_holder] --> variantes genéticas reportadas en el país y almacenarlas dentro de la base de datos LOVD<!-- [et_pb_line_break_holder] --> (capítulo argentino: ar.lovd.org). En el año 2017 fue establecido formalmente el Nodo<!-- [et_pb_line_break_holder] --> Argentino del HVP, habiéndose recolectado más de 25.000 variantes genéticas depositadas<!-- [et_pb_line_break_holder] --> por 17 laboratorios diferentes hasta junio de 2019. Hoy en día existen al menos 30 nodos del<!-- [et_pb_line_break_holder] --> HVP, correspondientes a diferentes países. En América Latina hay cuatro nodos: Argentina,<!-- [et_pb_line_break_holder] --> Brasil, México y Venezuela; Los dos primeros interactuaron recientemente lanzando la<!-- [et_pb_line_break_holder] --> base de datos LatinGen. En el presente trabajo queremos compartir nuestra experiencia en<!-- [et_pb_line_break_holder] --> la aplicación del proyecto HVP centrándonos en su organización, reglas y nomenclatura<!-- [et_pb_line_break_holder] --> para alcanzar el objetivo de compartir variantes genéticas y depositarlas en la base de datos<!-- [et_pb_line_break_holder] --> de variaciones abiertas de Leiden (LOVD). Es uno de nuestros objetivos estimular la más<!-- [et_pb_line_break_holder] --> alta calidad mediante la organización de cursos, aplicación de las reglas de nomenclatura<!-- [et_pb_line_break_holder] --> actuales, patrocinio de conferencias en congresos nacionales, distribución de boletines<!-- [et_pb_line_break_holder] --> informativos para la comunidad de genómica argentina, y estimulación de la interacción<!-- [et_pb_line_break_holder] --> entre los países de América Latina.</font></p><!-- [et_pb_line_break_holder] --><p><font size="2" face="Arial, Helvetica, sans-serif"><b>Palabras clave</b>: Compartir datos; Nodo argentino de LOVD; Proyecto Varioma Humano (HVP)-Argentina.</font></p><!-- [et_pb_line_break_holder] --><hr /><!-- [et_pb_line_break_holder] --><p> </p><!-- [et_pb_line_break_holder] --><p><font size="3" face="Arial, Helvetica, sans-serif"><strong>INTRODUCTION</strong></font></p><!-- [et_pb_line_break_holder] --><p><font size="3" face="Arial, Helvetica, sans-serif">The Human Variome Project (HVP) (Burn and Watson,<!-- [et_pb_line_break_holder] --> 2016) is a world-wide organization working to<!-- [et_pb_line_break_holder] --> facilitate the collection, curation and interpretation of<!-- [et_pb_line_break_holder] --> information on human genetic variation, as well as the<!-- [et_pb_line_break_holder] --> free and open sharing of this information. To facilitate<!-- [et_pb_line_break_holder] --> these goals, the HVP has created country nodes to<!-- [et_pb_line_break_holder] --> support data sharing and facilitating the process of<!-- [et_pb_line_break_holder] --> depositing genetic variants. A few reports have been<!-- [et_pb_line_break_holder] --> published that shed light on aspects critical for the role<!-- [et_pb_line_break_holder] --> of genetics in the current complex situation (Al Aama <em>et</em><!-- [et_pb_line_break_holder] --> <em>al.</em>, 2011; Patrinos <em>et al.</em>, 2011; Smith and Vihinen, 2015).<!-- [et_pb_line_break_holder] --> The Node of Argentina of the Human Variome<!-- [et_pb_line_break_holder] --> Project was launched in November 2017 with the<!-- [et_pb_line_break_holder] --> support of the Minister of Health Prof. Dr. Jorge<!-- [et_pb_line_break_holder] --> Lemus and his Vice Minister Néstor A. Pérez Baliño,<!-- [et_pb_line_break_holder] --> who were very enthusiastic in writing the letters for<!-- [et_pb_line_break_holder] --> proposing at the BRCA challenge/UNESCO the creation<!-- [et_pb_line_break_holder] --> of our node. A few professionals from different<!-- [et_pb_line_break_holder] --> areas joined their experiences in starting the activity<!-- [et_pb_line_break_holder] --> and all of them are listed in our web page: https://humanvariomeprojectargentina.org.ar/. We are running<!-- [et_pb_line_break_holder] --> through the generous activity of volunteers who donate<!-- [et_pb_line_break_holder] --> their work to manage the activities.<!-- [et_pb_line_break_holder] --> <br /><!-- [et_pb_line_break_holder] --> We are proud of the recent formal registration of our<!-- [et_pb_line_break_holder] --> node as a Non-Profit Association at the “Inspección<!-- [et_pb_line_break_holder] --> General de Justicia”, an achievement reached with<!-- [et_pb_line_break_holder] --> the assistance of our legal expert, Dr. Manuel Garrido,<!-- [et_pb_line_break_holder] --> which will allow us to pursue formal activities with legal<!-- [et_pb_line_break_holder] --> requirements.<!-- [et_pb_line_break_holder] --> It is necessary to put in context the current technical<!-- [et_pb_line_break_holder] --> and practical situation in the region to explain the<!-- [et_pb_line_break_holder] --> Argentinian HVP.<!-- [et_pb_line_break_holder] --> <br /><!-- [et_pb_line_break_holder] --> In the past few years the analyses of genetic variants<!-- [et_pb_line_break_holder] --> have increased since current technologies allowed to<!-- [et_pb_line_break_holder] --> expand sequencing, including in Latin America. Recent<!-- [et_pb_line_break_holder] --> reviews (Dutil <em>et al.</em>, 2015; Jara <em>et al.</em>, 2017) have revealed<!-- [et_pb_line_break_holder] --> significant genetic variants heterogeneity among the<!-- [et_pb_line_break_holder] --> different countries and in the methodologies and criteria<!-- [et_pb_line_break_holder] --> used for selecting patients which are often restricted by<!-- [et_pb_line_break_holder] --> the modest available budgets and constrained human<!-- [et_pb_line_break_holder] --> resources needed for clinical interpretation. In fact,<!-- [et_pb_line_break_holder] --> the initial available data reveals the heterogeneous<!-- [et_pb_line_break_holder] --> spectrum of pathogenic variants among the regions<!-- [et_pb_line_break_holder] --> and/or countries. This information may improve<!-- [et_pb_line_break_holder] --> clinical management and, therefore, improve patient<!-- [et_pb_line_break_holder] --> outcomes. In addition, the need for data to support<!-- [et_pb_line_break_holder] --> policies for genetic testing in different international<!-- [et_pb_line_break_holder] --> regions is what makes this a fundamental contribution<!-- [et_pb_line_break_holder] --> through this publication. The reports include a wide<!-- [et_pb_line_break_holder] --> variety of methodologies, reflecting the enormous<!-- [et_pb_line_break_holder] --> revolution in sequencing technologies over a short time<!-- [et_pb_line_break_holder] --> span. Therefore, cautious interpretation of the results<!-- [et_pb_line_break_holder] --> is imperative. The publications reviewed revealed a<!-- [et_pb_line_break_holder] --> lack of common and recurrent variants in the region.<!-- [et_pb_line_break_holder] --> Additionally, there are some Amerindian founder<!-- [et_pb_line_break_holder] --> variants for countries like Brazil, Colombia, Mexico,<!-- [et_pb_line_break_holder] --> Peru (Ossa and Torres, 2016) and Chile (Alvarez <em>et al.</em>,<!-- [et_pb_line_break_holder] --> 2017). Applications for Recommended System Status<!-- [et_pb_line_break_holder] --> can be made at any time to the ISAC via the ICO (Smith<!-- [et_pb_line_break_holder] --> and Vihinen, 2015).<!-- [et_pb_line_break_holder] --> <br /><!-- [et_pb_line_break_holder] --> In fact, there was a premonition back in 2008 by<!-- [et_pb_line_break_holder] --> Sir John Burn (Burn and Watson, 2016): “The HVP<!-- [et_pb_line_break_holder] --> attracted widespread support within the academic<!-- [et_pb_line_break_holder] --> community with more than a thousand affiliates at<!-- [et_pb_line_break_holder] --> the last count. The underlying concept was to move<!-- [et_pb_line_break_holder] --> toward a more formalized curation system based on<!-- [et_pb_line_break_holder] --> data shared between country nodes. It was recognized<!-- [et_pb_line_break_holder] --> that this would be necessary because of the significant<!-- [et_pb_line_break_holder] --> differences between different jurisdictions in terms<!-- [et_pb_line_break_holder] --> of data protection legislation, public perception of<!-- [et_pb_line_break_holder] --> genetics, research infrastructure, and diagnostic service<!-- [et_pb_line_break_holder] --> provision”. In the experience of the Argentinian node,<!-- [et_pb_line_break_holder] --> we are delighted for the opportunity to put into practice<!-- [et_pb_line_break_holder] --> this farsighted philosophy and practice of genetic work,<!-- [et_pb_line_break_holder] --> and the extraordinary possibility to extend it to all our<!-- [et_pb_line_break_holder] --> colleagues working in genetics in the country.</font></p><!-- [et_pb_line_break_holder] --><p><font size="3" face="Arial, Helvetica, sans-serif"><strong>SEQUENCING TECHNOLOGIES IN LATIN</strong><!-- [et_pb_line_break_holder] --> <strong>AMERICA, CONTRIBUTION OF THE</strong><!-- [et_pb_line_break_holder] --> <strong>NODES</strong></font></p><!-- [et_pb_line_break_holder] --><p><font size="3" face="Arial, Helvetica, sans-serif">Genetic analyses in Latin America (LA) have increased<!-- [et_pb_line_break_holder] --> exponentially in the last few years, albeit not as much<!-- [et_pb_line_break_holder] --> as in the rest of the world, the role of our country node<!-- [et_pb_line_break_holder] --> is essential as it uniforms the nomenclature by curating<!-- [et_pb_line_break_holder] --> the variants reported to be sent to the database (Leiden<!-- [et_pb_line_break_holder] --> Open Variation Database, LOVD, in our case), seeks<!-- [et_pb_line_break_holder] --> for education in genetics for clinicians and laboratory<!-- [et_pb_line_break_holder] --> professionals, stimulates academic activities, all of them<!-- [et_pb_line_break_holder] --> to improve the quality of clinical genetic information, as<!-- [et_pb_line_break_holder] --> the most important areas.<!-- [et_pb_line_break_holder] --> In our experience an important role of the Argentinian<!-- [et_pb_line_break_holder] --> node is to stimulate regional activities, since there is<!-- [et_pb_line_break_holder] --> much stimulus to promote the creation of nodes in other<!-- [et_pb_line_break_holder] --> countries and, hopefully, gain interactivity among the<!-- [et_pb_line_break_holder] --> working groups. An interesting example can be found in<!-- [et_pb_line_break_holder] --> the <em>BRCA1/2 </em>gene sequencing, the main focus.<br /><!-- [et_pb_line_break_holder] --> Among the most frequently analyzed genes are the<!-- [et_pb_line_break_holder] --> <em>BRCA1 </em>and <em>BRCA2 </em>genes. The information collected thus<!-- [et_pb_line_break_holder] --> far is not sufficient to discern the spectrum of genetic<!-- [et_pb_line_break_holder] --> variants in the different regions and/or countries.<!-- [et_pb_line_break_holder] --> Furthermore, it is becoming important as it may improve<!-- [et_pb_line_break_holder] --> clinical practice and subsequently benefit patient<!-- [et_pb_line_break_holder] --> outcomes. In addition, the need for data to support<!-- [et_pb_line_break_holder] --> policies for testing in different international regions is<!-- [et_pb_line_break_holder] --> a fundamental strength of the present communication.<!-- [et_pb_line_break_holder] --> The different publications included reports with a<!-- [et_pb_line_break_holder] --> wide spectrum of methodologies (Alemar <em>et al.</em>, 2016;<!-- [et_pb_line_break_holder] --> Kehdy <em>et al.</em>, 2015; Weitzel <em>et al.</em>, 2013), reflecting the<!-- [et_pb_line_break_holder] --> fast evolution in sequencing technologies and, thus,<!-- [et_pb_line_break_holder] --> a cautious interpretation is imperative to avoid the<!-- [et_pb_line_break_holder] --> eventual missing of variants due to the limitations of<!-- [et_pb_line_break_holder] --> the methods. Overall results showed very few common<!-- [et_pb_line_break_holder] --> variants in Latin America, although the substantial<!-- [et_pb_line_break_holder] --> differences in the methodologies are a limitation. In a<!-- [et_pb_line_break_holder] --> recent publication of the results published from sixteen<!-- [et_pb_line_break_holder] --> laboratory groups in Brazil (Palmero <em>et al.</em>, 2018), only<!-- [et_pb_line_break_holder] --> five performed full sequencing of both <em>BRCA1/2 </em>genes<!-- [et_pb_line_break_holder] --> (Alemar <em>et al.</em>, 2017; Carraro <em>et al.</em>, 2013; Fernandes <em>et al.</em>,<!-- [et_pb_line_break_holder] --> 2016; Maistro <em>et al.</em>, 2016; Silva <em>et al.</em>, 2014); the other<!-- [et_pb_line_break_holder] --> studies include sequencing selected exons, analyzing<!-- [et_pb_line_break_holder] --> only the <em>BRCA1 </em>gene and other various assays.<!-- [et_pb_line_break_holder] --> <br /><!-- [et_pb_line_break_holder] --> European ancestry is most prevalent in Argentina<!-- [et_pb_line_break_holder] --> (Cardoso <em>et al.</em>, 2018; Solano <em>et al.</em>, 2012; Solano <em>et al.</em>,<!-- [et_pb_line_break_holder] --> 2017; Solano <em>et al.</em>, 2018), Brazil (Palmero <em>et al.</em>, 2018) and<!-- [et_pb_line_break_holder] --> Uruguay (Delgado <em>et al.</em>, 2011) and the sequencing results<!-- [et_pb_line_break_holder] --> of novel and few recurrent variants are consistent with<!-- [et_pb_line_break_holder] --> heterogeneity from this admixture. Very importantly,<!-- [et_pb_line_break_holder] --> a warning for not blindly importing panels of hotspot<!-- [et_pb_line_break_holder] --> genetic variants if not tested before in the local context of<!-- [et_pb_line_break_holder] --> regional spectrum of variants. In fact, this contributes to<!-- [et_pb_line_break_holder] --> the best interpretation of the genetic results as a crucial<!-- [et_pb_line_break_holder] --> part of our educational function, always necessary as<!-- [et_pb_line_break_holder] --> described and discussed for Argentina (Solano <em>et al.</em>,<!-- [et_pb_line_break_holder] --> 2017). It echoes similar findings in Brazil (Alemar <em>et al.</em>,<!-- [et_pb_line_break_holder] --> 2016) and confirmed the lack of usefulness in the recent<!-- [et_pb_line_break_holder] --> compilation of publications (Palmero <em>et al.</em>, 2018). There<!-- [et_pb_line_break_holder] --> are some Amerindian founder variants identified in<!-- [et_pb_line_break_holder] --> countries like Brazil, Colombia, Mexico, Peru (Ossa and<!-- [et_pb_line_break_holder] --> Torres, 2016) and Chile (Alvarez <em>et al.</em>, 2017), reflecting<!-- [et_pb_line_break_holder] --> the local contribution to the genetic spectrum from the<!-- [et_pb_line_break_holder] --> native populations, a very important population and<!-- [et_pb_line_break_holder] --> epidemiological disclosure.<!-- [et_pb_line_break_holder] --> <br /><!-- [et_pb_line_break_holder] --> Even in the recent survey “worldwide snapshot”<!-- [et_pb_line_break_holder] --> (Toland <em>et al.</em>, 2018), the authors did not receive relevant<!-- [et_pb_line_break_holder] --> data from LA (the data in the publication does not<!-- [et_pb_line_break_holder] --> represent Latin America; it only includes two laboratories:<!-- [et_pb_line_break_holder] --> one each for Argentina and Brazil). The sample surveyed<!-- [et_pb_line_break_holder] --> does not represent the actual technological situation<!-- [et_pb_line_break_holder] --> in the region and specifically neither of the two Latin<!-- [et_pb_line_break_holder] --> American countries both with an HVP country node,<!-- [et_pb_line_break_holder] --> that could be of utility to validate the reported data; the<!-- [et_pb_line_break_holder] --> rest of the countries were not included in the survey,<!-- [et_pb_line_break_holder] --> which consists of an Excel spreadsheet of 65 fields, so<!-- [et_pb_line_break_holder] --> the conclusions are extremely limited when it comes to<!-- [et_pb_line_break_holder] --> this region. A rescue for this omission was written by 9<!-- [et_pb_line_break_holder] --> laboratories (Argentina, Brazil, Chile, Colombia, Costa<!-- [et_pb_line_break_holder] --> Rica, Guatemala, Mexico and Uruguay) with an author<!-- [et_pb_line_break_holder] --> from the original study who open the survey for Latino<!-- [et_pb_line_break_holder] --> America and we sent for publication in November 2019.<!-- [et_pb_line_break_holder] --> <br /><!-- [et_pb_line_break_holder] --> A more realistic overview can be obtained by reviewing<!-- [et_pb_line_break_holder] --> databases in the case of Argentina, with 25,064 variants<!-- [et_pb_line_break_holder] --> deposited at LOVD, by 17 laboratories from five cities<!-- [et_pb_line_break_holder] --> in the country. A brief description of genetic testing in<!-- [et_pb_line_break_holder] --> Argentina was recently summarized (Cotignola <em>et al.</em>,<!-- [et_pb_line_break_holder] --> 2019).<!-- [et_pb_line_break_holder] --> All these technical limitations highlight the<!-- [et_pb_line_break_holder] --> importance and the utility of the policies effective<!-- [et_pb_line_break_holder] --> worldwide through the leadership of HVP country<!-- [et_pb_line_break_holder] --> nodes, including data sharing and practices (Smith and<!-- [et_pb_line_break_holder] --> Vihinen, 2015).</font></p><!-- [et_pb_line_break_holder] --><p><font size="3" face="Arial, Helvetica, sans-serif"><strong>ACADEMIC ACTIVITIES OF THE</strong><!-- [et_pb_line_break_holder] --> <strong>ARGENTINIAN NODE OF THE HUMAN</strong><!-- [et_pb_line_break_holder] --> <strong>VARIOME PROJECT</strong></font></p><!-- [et_pb_line_break_holder] --><p><font size="3" face="Arial, Helvetica, sans-serif">As published (Smith and Vihinen, 2015): “the HVP<!-- [et_pb_line_break_holder] --> Consortium works collaboratively to define international<!-- [et_pb_line_break_holder] --> standards and guidelines that describe best-practice<!-- [et_pb_line_break_holder] --> methodology in each of the areas, which can then be<!-- [et_pb_line_break_holder] --> utilized in the implementation of specific systems and<!-- [et_pb_line_break_holder] --> processes.<br /><!-- [et_pb_line_break_holder] --> ”<!-- [et_pb_line_break_holder] --> In pursuing the optimal translation of these<!-- [et_pb_line_break_holder] --> practices into our professional local community, we<!-- [et_pb_line_break_holder] --> organized in Argentina both local meetings and a few<!-- [et_pb_line_break_holder] --> international meetings documented in our webpage,<!-- [et_pb_line_break_holder] --> www.humanvariomeprojectargentina.org.ar/, as follows:<!-- [et_pb_line_break_holder] --> <br /><!-- [et_pb_line_break_holder] --> • Prof. Dr. Johan den Dunnen from the Leiden Open<!-- [et_pb_line_break_holder] --> Variation Database, Netherlands participated at<!-- [et_pb_line_break_holder] --> the “XLVI Argentine Congress of Genetics and<!-- [et_pb_line_break_holder] --> IV Regional Conference SAG-NOA” (Catamarca,<!-- [et_pb_line_break_holder] --> Argentina, October 1st-4th, 2017, www.sag.org.ar).<!-- [et_pb_line_break_holder] --> He also lectured at “Centro de Educación Médica<!-- [et_pb_line_break_holder] --> e Investigaciones Clínicas (CEMIC), October 6th,<!-- [et_pb_line_break_holder] --> 2017” resulting very fruitful interaction with<!-- [et_pb_line_break_holder] --> the experts present from the most specialized<!-- [et_pb_line_break_holder] --> Institutions in hereditary cancer in Argentina.<br /><!-- [et_pb_line_break_holder] -->• Organized by the “Sociedad Argentina de<!-- [et_pb_line_break_holder] -->Investigación Clínica” (SAIC) held in Buenos<!-- [et_pb_line_break_holder] --> Aires, Argentina, Prof. Dr. Juergen K.V. Reichardt<!-- [et_pb_line_break_holder] --> participated, at both levels, interacting with the<!-- [et_pb_line_break_holder] --> Community, on November 12th 2017, and the<!-- [et_pb_line_break_holder] --> day after at the Annual Congress of SAIC (https://<!-- [et_pb_line_break_holder] --> www.saic.org.ar) as speaker at the Symposia of<!-- [et_pb_line_break_holder] --> the Node. The interest of the community in the<!-- [et_pb_line_break_holder] --> genetic concepts and the application in health was<!-- [et_pb_line_break_holder] --> remarkable, the clarity of Dr. Reichardt was key for<!-- [et_pb_line_break_holder] --> the excellent interaction.<!-- [et_pb_line_break_holder] --><br /><!-- [et_pb_line_break_holder] -->• At the International Congress of Genetics (ICG) in Foz<!-- [et_pb_line_break_holder] -->do Iguaçu, Brazil, September 10th to 15th, 2018, the<!-- [et_pb_line_break_holder] --> Chair of the Node of Argentina, Dr. Angela R. Solano<!-- [et_pb_line_break_holder] --> lectured in a Symposium with the participation of<!-- [et_pb_line_break_holder] --> three other Latino American scientists.<!-- [et_pb_line_break_holder] --><br /><!-- [et_pb_line_break_holder] -->• Held in Buenos Aires on November 22nd and 23rd,<!-- [et_pb_line_break_holder] --> 2018, the Workshop of the Node of Argentina of<!-- [et_pb_line_break_holder] --> the Human Variome Project was a very interactive<!-- [et_pb_line_break_holder] --> meeting. The workshop was a success and it<!-- [et_pb_line_break_holder] --> is remarkable the interest and enthusiasm of<!-- [et_pb_line_break_holder] --> the participants sustained by lectures which<!-- [et_pb_line_break_holder] --> updated data including practical implications and<!-- [et_pb_line_break_holder] --> application of programs in clinical cases in their own<!-- [et_pb_line_break_holder] --> notebooks, skills to be reinforced as they are very<!-- [et_pb_line_break_holder] --> critical nowadays due to the permanent advances<!-- [et_pb_line_break_holder] --> and the necessity of an updated knowledge through<!-- [et_pb_line_break_holder] --> life-long learning.<!-- [et_pb_line_break_holder] --> </font></p><!-- [et_pb_line_break_holder] --><p><font size="3" face="Arial, Helvetica, sans-serif">The importance of the meeting was reinforced by<!-- [et_pb_line_break_holder] --> the recognition of Prof. Dr. Johan den Dunnen as Honor<!-- [et_pb_line_break_holder] --> Guest for the City Hall of the City of Buenos Aires, on<!-- [et_pb_line_break_holder] --> November 21st. For this occasion Dr. den Dunnen gave<!-- [et_pb_line_break_holder] --> an impressive presentation on “International Standards<!-- [et_pb_line_break_holder] --> for Genetics Nomenclature”, held at the Golden Room of<!-- [et_pb_line_break_holder] --> the main Palace of the City Hall.<!-- [et_pb_line_break_holder] --> The Argentinian Node was invited to participate of<!-- [et_pb_line_break_holder] --> the activities of the Ecuador network for genetics and<!-- [et_pb_line_break_holder] --> genomics (Red de Genética y Genómica, ReGG: https://www.yachaytech.edu.ec/en/regg/) (founded by one<!-- [et_pb_line_break_holder] --> of us, JKVR) a year ago to promote research, training,<!-- [et_pb_line_break_holder] --> offer continuing education, share expertise, equipment,<!-- [et_pb_line_break_holder] --> advice and assessment in Ecuador. This association is<!-- [et_pb_line_break_holder] --> made up of two universities, four research institutes and<!-- [et_pb_line_break_holder] --> the Secretariat for Science and Technology (SENESCYT;<!-- [et_pb_line_break_holder] --> the equivalent of the Science and Technology Ministry<!-- [et_pb_line_break_holder] --> in Ecuador).<!-- [et_pb_line_break_holder] --> <br /><!-- [et_pb_line_break_holder] --> ReGG has held monthly meetings and also held its first<!-- [et_pb_line_break_holder] --> annual meeting in April 2019 in Quito, Ecuador (www.<!-- [et_pb_line_break_holder] --> yachaytech.edu.ec/en/noticia/first-regg-annualreunion/).<!-- [et_pb_line_break_holder] --> This meeting brought together national and<!-- [et_pb_line_break_holder] --> international speakers and paved the way for a bright<!-- [et_pb_line_break_holder] --> future for genetics and genomics in Ecuador amongst<!-- [et_pb_line_break_holder] --> its 150 participants. It is anticipated that the annual<!-- [et_pb_line_break_holder] --> meeting will continue and serve as a conduit for national<!-- [et_pb_line_break_holder] --> and regional collaboration as well.<!-- [et_pb_line_break_holder] --> The common activities in Latin American countries<!-- [et_pb_line_break_holder] --> will be hopefully shared at LatinGen (www.latingen.<!-- [et_pb_line_break_holder] --> org), launched with the colleague from Brazil including<!-- [et_pb_line_break_holder] --> the Chair of the Node of Brazil of the Human Variome<!-- [et_pb_line_break_holder] --> Project, Dr. Iscia Lopes-Cendes. The aim is to support<!-- [et_pb_line_break_holder] --> data-sharing in LA by fostering collaboration and<!-- [et_pb_line_break_holder] --> integration among projects in different countries, as<!-- [et_pb_line_break_holder] --> follows:<!-- [et_pb_line_break_holder] --> <br /><!-- [et_pb_line_break_holder] --> • a) To facilitate the centralization and integration of<!-- [et_pb_line_break_holder] --> public databases already established in LA.<br /><!-- [et_pb_line_break_holder] --> • b) To stimulate and support new initiatives by<!-- [et_pb_line_break_holder] --> providing technical assistance (bioinformatics<!-- [et_pb_line_break_holder] --> expertise) to implement public databases in LA.<!-- [et_pb_line_break_holder] --> <br /><!-- [et_pb_line_break_holder] --> • c) To support education and training in the field of<!-- [et_pb_line_break_holder] --> human genetic variation in LA.</font></p><!-- [et_pb_line_break_holder] --><p><font size="3" face="Arial, Helvetica, sans-serif">As it is summarized in the web page of the Argentinian<!-- [et_pb_line_break_holder] --> Node: “Latin America and the Caribbean region make up<!-- [et_pb_line_break_holder] -->one of the largest areas of the world, and this region is<!-- [et_pb_line_break_holder] -->characterized by a complex mixture of ethnic groups<!-- [et_pb_line_break_holder] -->sharing Iberian languages. The area is comprised of<!-- [et_pb_line_break_holder] -->nations with different levels of social development. This<!-- [et_pb_line_break_holder] -->region has experienced historical advances in the last<!-- [et_pb_line_break_holder] -->decades to increase the minimal standards of quality<!-- [et_pb_line_break_holder] -->of life; however, several factors such as concentrated<!-- [et_pb_line_break_holder] -->populations in large urban centers and isolated poor<!-- [et_pb_line_break_holder] -->communities still have an important impact on medical<!-- [et_pb_line_break_holder] -->services. Latin American researchers have greatly<!-- [et_pb_line_break_holder] -->contributed to the development of genetics and historic<!-- [et_pb_line_break_holder] -->interethnic diversity and the multiplicity of geographic<!-- [et_pb_line_break_holder] -->areas are unique for the study of gene-environment<!-- [et_pb_line_break_holder] -->interactions”.</font></p><!-- [et_pb_line_break_holder] --><p><font size="3" face="Arial, Helvetica, sans-serif"><strong>DATA SHARING AND GENETIC</strong><!-- [et_pb_line_break_holder] --> <strong>DEVELOPMENT</strong></font></p><!-- [et_pb_line_break_holder] --><p><font size="3" face="Arial, Helvetica, sans-serif">As a round-up concept for this work: data sharing is an<!-- [et_pb_line_break_holder] --> international initiative from clinical, medical, and basic<!-- [et_pb_line_break_holder] --> research laboratories to systematically identify and<!-- [et_pb_line_break_holder] --> document genetic variants (including pathogenic and<!-- [et_pb_line_break_holder] --> benign genomic variants) worldwide. Data is provided<!-- [et_pb_line_break_holder] --> as gene and/or disease-specific collections, and also<!-- [et_pb_line_break_holder] --> as country-specific data, and this effort sustains the<!-- [et_pb_line_break_holder] --> country-specific variants listing in the LOVD, for us:<!-- [et_pb_line_break_holder] --> ar.lovd.org; we succeeded in improving the translational<!-- [et_pb_line_break_holder] --> research strategies and clinical decision-making<!-- [et_pb_line_break_holder] --> processes nationally, regionally and beyond. The<!-- [et_pb_line_break_holder] --> challenge is ongoing and we look forward to accelerate the<!-- [et_pb_line_break_holder] --> production of results taking advantage of the enormous<!-- [et_pb_line_break_holder] --> progress in the era of rapidly advancing technologies.<!-- [et_pb_line_break_holder] --> Actually, the most critical part may be the decision to be a<!-- [et_pb_line_break_holder] --> depositor of all variants detected, an attitude that in some<!-- [et_pb_line_break_holder] --> laboratories still is a matter of some hesitation, and the<!-- [et_pb_line_break_holder] --> good news is that many new laboratories are incorporated<!-- [et_pb_line_break_holder] --> daily into this data sharing effort.<!-- [et_pb_line_break_holder] --> <br /><!-- [et_pb_line_break_holder] --> Finally, we mention the updates and alerts about new<!-- [et_pb_line_break_holder] -->sand challenges in the worldwide genetics and genomics<!-- [et_pb_line_break_holder] -->community, published in the weekly newsletter of the<!-- [et_pb_line_break_holder] -->Global Alliance for Genetics and Health (GA4GH; www.<!-- [et_pb_line_break_holder] -->ga4gh.org). An important disclosure a few months ago<!-- [et_pb_line_break_holder] -->was a description about the current landscape of the<!-- [et_pb_line_break_holder] -->direct to consumers (DTC) laboratories: DTC laboratories<!-- [et_pb_line_break_holder] -->are enterprises engaged in sequencing DNA of a client<!-- [et_pb_line_break_holder] -->sample sent following the instructions of a kit that can<!-- [et_pb_line_break_holder] -->be bought at the pharmacies and paid by the consumer,<!-- [et_pb_line_break_holder] -->without the necessity of a medical order. The danger<!-- [et_pb_line_break_holder] -->arises of its application in diagnostics (press release,<!-- [et_pb_line_break_holder] -->March 6th, 2018, www.ga4gh.org). A very important<!-- [et_pb_line_break_holder] -->matter for the professionals involved is the writing<!-- [et_pb_line_break_holder] -->of reports with clinical importance for patients, from<!-- [et_pb_line_break_holder] -->which medical decisions will be supported, including<!-- [et_pb_line_break_holder] -->diagnoses, treatments, surgeries, etc.</font></p><!-- [et_pb_line_break_holder] --><p><font size="3" face="Arial, Helvetica, sans-serif"><strong>REMARKS AND CONCLUSIONS</strong></font></p><!-- [et_pb_line_break_holder] --><p><font size="3" face="Arial, Helvetica, sans-serif">The role of the Argentinian node of the HVP is to support<!-- [et_pb_line_break_holder] --> the activities in genetics and genomics in every province<!-- [et_pb_line_break_holder] --> of Argentina, and we are looking forward to increasing<!-- [et_pb_line_break_holder] --> the contribution from all local laboratories involved in<!-- [et_pb_line_break_holder] --> gene sequencing. Furthermore, we hope that our work<!-- [et_pb_line_break_holder] --> may serve as an inspiration to other countries in the<!-- [et_pb_line_break_holder] --> region that still do not have their own nodes, and we<!-- [et_pb_line_break_holder] --> are always happy to share our experience to make the<!-- [et_pb_line_break_holder] --> implementation of the countries nodes easier and faster.<!-- [et_pb_line_break_holder] --> <br /><!-- [et_pb_line_break_holder] --> The launching of the LatinGen database with our<!-- [et_pb_line_break_holder] -->colleagues from Brazil is very promising to stimulate<!-- [et_pb_line_break_holder] -->the interaction of the region and to join efforts in<!-- [et_pb_line_break_holder] -->the genetic development of Latin America countries.</font></p><!-- [et_pb_line_break_holder] --><p><font size="3" face="Arial, Helvetica, sans-serif"><strong><font size="2">ACKNOWLEDGEMENTS</font></strong></font></p><!-- [et_pb_line_break_holder] --><p><font size="2" face="Arial, Helvetica, sans-serif">We wish to thank for the stimulus in the<!-- [et_pb_line_break_holder] --> creation and support of the Node of Argentina<!-- [et_pb_line_break_holder] --> of the Human Variome Project to: Prof. Dr.<!-- [et_pb_line_break_holder] --> Néstor A. Pérez Baliño (Vice Minister) and<!-- [et_pb_line_break_holder] --> Prof. Dr. Jorge D. Lemus (Minister) from the<!-- [et_pb_line_break_holder] --> Ministerio de Salud de la República Argentina<!-- [et_pb_line_break_holder] --> (2016); Prof. Dr. Miguel Galmés (President)<!-- [et_pb_line_break_holder] --> and Elías Hurtado Hoyo (Past-President) of<!-- [et_pb_line_break_holder] --> the Asociación Médica Argentina (AMA); Ing.<!-- [et_pb_line_break_holder] --> Agr. Dr. Juan Carlos Salerno, President of the<!-- [et_pb_line_break_holder] --> Sociedad Argentina de Genética; Dr. Graciela<!-- [et_pb_line_break_holder] --> Cremaschi (Past President, 2016) of the<!-- [et_pb_line_break_holder] --> Sociedad Argentina de Investigación Clínica<!-- [et_pb_line_break_holder] --> (SAIC); Dr. Juan Lacava (Past President, 2016)<!-- [et_pb_line_break_holder] --> of the Asociación Argentina de Oncología<!-- [et_pb_line_break_holder] --> Clínica (AAOC); Dr. Marcelo Blanco Villalba<!-- [et_pb_line_break_holder] --> (Past President, 2016) of the Sociedad de<!-- [et_pb_line_break_holder] --> Cancerología; from the Human Variome<!-- [et_pb_line_break_holder] --> Project, ISAC: Prof. Dr. Sir John Burn; Prof.<!-- [et_pb_line_break_holder] --> Dr. Johan den Dunnen; Prof. Dr. Martina<!-- [et_pb_line_break_holder] --> Witsch-Baumgartner and Helen M. Robinson;<!-- [et_pb_line_break_holder] --> from CEMIC, the Laboratory of Genotyping:<!-- [et_pb_line_break_holder] --> Dr. Florencia C. Cardoso, Dr. Natalia C. Liria,<!-- [et_pb_line_break_holder] --> Dr. Fernanda S. Jalil and Dr. Daniela M.<!-- [et_pb_line_break_holder] --> Faggionato, all of them also members of the<!-- [et_pb_line_break_holder] --> HVP and to the Director of the Departamento<!-- [et_pb_line_break_holder] --> de Asistencia Médica, Dr. Oscar Mandó. JKVR<!-- [et_pb_line_break_holder] --> is supported by IDFEC, the International<!-- [et_pb_line_break_holder] --> Development Fund for Economy and Culture.<!-- [et_pb_line_break_holder] --> We are also grateful to the contributors of<!-- [et_pb_line_break_holder] --> the Node of Argentina listed on the web page<!-- [et_pb_line_break_holder] --> (<a href="https://www.humanvariomeprojectargentina.org.ar" target="_blank">www.humanvariomeprojectargentina.org.ar</a>).</font></p><!-- [et_pb_line_break_holder] --><p><font size="2" face="Arial, Helvetica, sans-serif"><strong>REFERENCES</strong></font></p><!-- [et_pb_line_break_holder] --><p><font size="2" face="Arial, Helvetica, sans-serif">1. Al Aama J., Smith T.D., Lo A., Howard H., Kline A.A., Lange M., Kaput J.,<!-- [et_pb_line_break_holder] --> Cotton R.G. (2011) Initiating a Human Variome Project Country Node.<!-- [et_pb_line_break_holder] -->Hum. 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